The Transposon Registry

Displaying 581 - 600 of 2083
Tn6267
Mrs Nutan P Sapkota
University of leicester
Contact
nps19@le.ac.uk
Tn6268
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6268 is a 4.1-kb transposon, found in Sphingobium sp. strain TKS (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6269
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6269 is a 4.1-kb transposon, found in Sphingobium sp. strain TKS (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6270
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6270 is a 4.2-kb transposon, found in Sphingobium sp. strain TKS (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6271
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6271 is a 3.7-kb transposon, found in Sphingobium sp. strain TKS (isolated from HCH-contaminated soil). It contained tnpA and recombinase genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6272
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6272 is a 3.8-kb transposon, found in Sphingobium sp. strain TKS (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6273
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6273 is a 2.4-kb transposon, found in Sphingobium sp. strain TKS (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6274
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6274 is a 4.6-kb transposon, found in Sphingobium sp. strain MI1205 (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6275
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6275 is a 3.8-kb transposon, found in Sphingobium sp. strain MM-1 (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6276
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6276 is a 3.8-kb transposon, found in Sphingobium sp. strain MM-1 (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6277
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6277 is a 5.3-kb transposon, found in Sphingobium sp. strain MM-1 (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6278
Dr Michiro Tabata
Tohoku University
Characteristics
Tn6278 is a 3.8-kb transposon, found in Sphingobium sp. strain MM-1 (isolated from HCH-contaminated soil). It contained tnpR and tnpA genes.
References

Tabata M, Ohhata S, Nikawadori Y, et al. Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. DNA Research. 2016;23(6):581-599. DOI: 10.1093/dnares/dsw041.

Accession number
Contact
t-michiro@ige.tohoku.ac.jp
Tn6279
Dr Nabil Karah
Umeå University
  • Antibiotic Resistance
  • Chloramphenicol
  • Erythromycin
  • Gentamicin
  • Kanamycin
  • Streptomycin
  • Sulphonamide
Characteristics
Tn6279 is a 21-kb composite transposon found in Acinetobacter baumannii strain A071. It contained two IS26 flanking two segments sharing an internal copy of IS26. The first segment, Tn6020b-1, carried only the aphA1b gene. The second segment, Tn1548-like-1, carried six antimicrobial resistance genes [sul1, aacA4, catB8, aadA1, armA, msr(E), and mph(E)], with three of them (sul1, aacA4, catB8, and aadA1) being part of a class 1 integron.
References

Karah N, Dwibedi CK, Sjöström K, et al. Novel Aminoglycoside Resistance Transposons and Transposon-Derived Circular Forms Detected in Carbapenem-Resistant Acinetobacter baumannii Clinical Isolates. Antimicrobial Agents and Chemotherapy. 2016;60(3):1801-1818. DOI: 10.1128/AAC.02143-15.

Accession number
Contact
nabil.karah@umu.se
Tn6280
Mrs Khadidja Yousfi
laboratoire de sante publique du quebec
Contact
khadidja.yousfi@hotmail.com
Tn6281
Mrs Khadidja Yousfi
laboratoire de sante publique du quebec
Contact
khadidja.yousfi@hotmail.com
Tn6282
Mrs Khadidja Yousfi
laboratoire de sante publique du quebec
Contact
khadidja.yousfi@hotmail.com
Tn6283
Dr Hirokazu Yano
University of Tokyo
  • Virulence Determinants
  • Thiol peroxidase production
Characteristics
Tn6283 is a 13.8-kb integrative element, found in plasmid pSEA1 from Vibrio sp. strain 04Ya108. It contained two tyrosine recombinase genes (intA and intB), a Group II intron reverse transcriptase gene and thioredoxin-dependent thiol peroxidase gene.
References

Nonaka L, Yamamoto T, Maruyama F, et al. Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate. Cloeckaert A, ed. PLoS ONE. 2018;13(6):e0198613. DOI: 10.1371/journal.pone.0198613.

Accession number
Contact
hyano@ims.u-tokyo.ac.jp
Tn6284
Prof Dongsheng Zhou
Beijing Institute of Microbiology and Epidemiology
  • Antibiotic Resistance
  • Carbapenem
  • Chloramphenicol
  • Erythromycin
  • Rifampicin
  • Streptomycin
  • Heavy Metal Resistance
  • Mercury Resistance
Characteristics
Tn6284 is a 22.6-kb Tn3-family transposon, found in plasmid pHN39-SIM from Pseudomonas aeruginosa strain HN39. It is generated from the insertion of In1208 into the Tn5046 res site, disrupting Tn5046 into two separate parts. In1208 integron was an In4-family integron, which carried IS6100, sul1 gene in 3'CS and six gene cassettes, containing at least seven corresponding genes blaSIM-2, gcu104 (unknown function), ereA1c (erythromycin resistance), catB3q (chloramphenicol resistance)-gcu161 (unknown function), arr3 (rifampicin resistance) and aadA1a (streptomycin resistance), respectively. Mercury resistance gene cluster (merEDACPTR) was also found in Tn6284 as part of the Tn5064.
References

Sun, F., et al. (2016). "The first report of detecting the blaSIM-2 gene and determining the complete sequence of the SIM-encoding plasmid." Clin Microbiol Infect 22(4): 347-351. DOI: 10.1016/j.cmi.2015.12.001

Accession number
Contact
dongshengzhou1977@gmail.com
Tn6285
Prof Dongsheng Zhou
Beijing Institute of Microbiology and Epidemiology
  • Antibiotic Resistance
  • Chloramphenicol
  • Erythromycin
  • Kanamycin
  • Antispetic Resistance
  • Quaternary ammonium compound
  • Heavy Metal Resistance
  • Mercury Resistance
Characteristics
Tn6285 is a 25.8-kb Tn3-family transposon found in plasmid p2246-CTXM from Shigella boydii strain 2246. It contained two separate fractions of Tn21 remnants (IRLTn21-mer-urf2-DRIn2- IRiIn2-ΔtniA and IRtIn2-DRIn2-tnpM), which were separated by the insertion of Tn6295 [containing erm(B)L-erm(B) genes] and IS26-mph(A)-mrx-mphR(A)-IS6100. It also contained ΔIn153 [containing two resistance gene cassettes aacA4 and cmlA1], a Tn1722 remnant (Δmcp-IRRTn1722), a truncated version of the ISEcp1-blaCTX-M-14-based transposition unit (IB14TU), and IS26.
References

Wang L, Liu L, Liu D, et al. The First Report of a Fully Sequenced Resistance Plasmid from Shigella boydii. Frontiers in Microbiology. 2016;7:1579. DOI: 10.3389/fmicb.2016.01579.

Accession number
Contact
dongshengzhou1977@gmail.com
Tn6286
Prof Dongsheng Zhou
Beijing Institute of Microbiology and Epidemiology
  • Antibiotic Resistance
  • Chloramphenicol
  • Florfenicol
  • Kanamycin
  • Quinalone
  • Sulphonamide
  • Trimethoprim
Characteristics
Tn6286 is a 23.7-kb transposon in the Tn21 subgroup of the Tn3 family, found in plasmid p12969-DIM Pseudomonas putida strain 12969. It contained Tn1403 transposition module (tnpAR-truncated res site), In1226 [containing qnrVC6-aacA3-ISPpu24-catB11c (chloramphenicol and florfenicol resistance)-dfrA1z (trimethoprim resistance), sul1 in 3'CS, ISCR1 and ΔcmlA9] and In1225 [containing aacA3-ISPpu25-catB11c-gcu163], IS26, and mcp gene.
References

Sun, F., et al. (2016). "Genetic characterization of a novel blaDIM-2-carrying megaplasmid p12969-DIM from clinical Pseudomonas putida." J Antimicrob Chemother 71(4): 909-912. DOI: 10.1093/jac/dkv426

Accession number
Contact
dongshengzhou1977@gmail.com

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