The Transposon Registry

Displaying 1301 - 1320 of 2138
Tn6990
Dr Mingju Hao
Contact
haomingju@163.com
Tn6991
Dr Mingju Hao
Contact
haomingju@163.com
Tn6992
Dr Mingju Hao
Contact
haomingju@163.com
Tn6993
Martin McHugh
University of St Andrews
  • Antibiotic Resistance
  • Chloramphenicol
  • Clindamycin
  • Erythromycin
  • Florfenicol
  • Lincomycin
  • Oxazolidinone
  • Spectinomycin
  • Streptogramin A
  • Streptogramin B
Characteristics
Tn6993 is a 14.2kb transposon found in plasmid pWE0254-1 carried by Enterococcus faecalis isolated from a human urinary tract infection. Tn6993 is a variant of Tn6674, carrying optrA, ermB, and ANT(9)-Ia resistance genes as well as a unique 1.2kb insertion of an IS3-family transposase.
References

McHugh MP, Parcell BJ, Pettigrew KA, et al (2022). Presence of optrA-mediated linezolid resistance in multiple lineages and plasmids of Enterococcus faecalis revealed by long read sequencing. Microbiology 168(2):001137. DOI: https://doi.org/10.1099/mic.0.001137

Accession number
Contact
mpm20@st-andrews.ac.uk
Tn6994
Pak-Leung Ho
The University of Hong Kong
Characteristics
Tn6994 is a 209 kb conjugative transposon found in Bacteroides fragilis. Several resistance genes were found in this transposon, including nimL, ant9-Ia, ant6-1b, cfr(C) (chloramphenicol/fluorfenicol resistance gene), erm(G) and tetQ genes.
References

Cao H, Liu MC, Tong MK, Jiang S, Chow KH, To KK, Tse CW, Ho PL (2022) Comprehensive investigation of antibiotic resistance gene content in cfiA-harboring Bacteroides fragilis isolates of human and animal origins by whole genome sequencing. Int J Med Microbiol 312: 151559. https://doi.org/10.1016/j.ijmm.2022.151559

Accession number
Contact
plho@hku.hk
Tn6995
Pak-Leung Ho
Contact
plho@hku.hk
Tn6996
Pak-Leung Ho
Contact
plho@hku.hk
Tn6997
Shuxiu Liu
Contact
liu_sx0119@163.com
Tn6998
Dr Ralf Lopes
Contact
rmouralopes@gmail.com
Tn6999
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn6999 was found in Scytonema hofmannii PCC 7110. It encodes a variant Type V-K CRISPR–Cas system that allows for RNA-guided transposition.
References

Vo, P. L. H., et al. (2021). "CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering" Nature Biotechnology. DOI: 10.1038/s41587-020-00745-y

Accession number
Contact
shsternberg@gmail.com
Tn7000
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7000 was found in Vibrio cholerae strain 4874. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.021

Accession number
Contact
shsternberg@gmail.com
Tn7001
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7001 was found in Photobacterium iliopiscarium strain NCIMB 13355. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.022

Accession number
Contact
shsternberg@gmail.com
Tn7002
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7002 was found in Vibrio sp. F12 strain 10N.286.46.E4. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.023

Accession number
Contact
shsternberg@gmail.com
Tn7003
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7003 was found in Vibrio parahaemolyticus strain FORC_071. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.024

Accession number
Contact
shsternberg@gmail.com
Tn7004
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7004 was found in Vibrio sp. 16. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.025

Accession number
Contact
shsternberg@gmail.com
Tn7005
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7005 was found in Vibrio cholerae strain M1517. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.026

Accession number
Contact
shsternberg@gmail.com
Tn7006
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7006 was found in Vibrio splendidus strain UCD-SED10. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.027

Accession number
Contact
shsternberg@gmail.com
Tn7007
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7007 was found in Aliivibrio wodanis 06/09/160. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.028

Accession number
Contact
shsternberg@gmail.com
Tn7008
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7008 was found in Aliivibrio sp. 1S175. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.029

Accession number
Contact
shsternberg@gmail.com
Tn7009
Assistant Professor Samuel Henry Sternberg
Characteristics
Tn7009 was found in Parashewanella spongiae strain HJ039. It encodes a variant Type I-F CRISPR–Cas system that allows for RNA-guided transposition.
References

Klompe, S. E., et al. (2022). "Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons" Molecular Cell. DOI: 10.1016/j.molcel.2021.12.030

Accession number
Contact
shsternberg@gmail.com

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